PoplarV1, Main, Exploration, bibRecord, 001042

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.

Identifieur interne : 001042 ( Main/Exploration ); précédent : 001041; suivant : 001043

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.

Auteurs : Wellington Muchero [États-Unis] ; Kelsey L. Sondreli [États-Unis] ; Jin-Gui Chen [États-Unis] ; Breeanna R. Urbanowicz [États-Unis] ; Jin Zhang [États-Unis] ; Vasanth Singan [États-Unis] ; Yongil Yang [États-Unis] ; Robert S. Brueggeman [États-Unis] ; Juan Franco-Coronado [États-Unis] ; Nivi Abraham [États-Unis] ; Jeong-Yeh Yang [États-Unis] ; Kelley W. Moremen [États-Unis] ; Alexandra J. Weisberg [États-Unis] ; Jeff H. Chang [États-Unis] ; Erika Lindquist [États-Unis] ; Kerrie Barry [États-Unis] ; Priya Ranjan [États-Unis] ; Sara Jawdy [États-Unis] ; Jeremy Schmutz [États-Unis] ; Gerald A. Tuskan [États-Unis] ; Jared M. Leboldus [États-Unis]

Source :

Proceedings of the National Academy of Sciences of the United States of America [ 1091-6490 ] ; 2018.

RBID : pubmed:30337484

Descripteurs français

English descriptors

KwdEn :
- Alleles (MeSH), Chromosome Mapping (MeSH), Chromosomes, Plant (chemistry), Disease Resistance (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genetic Loci (MeSH), Host-Pathogen Interactions (genetics), Host-Pathogen Interactions (immunology), Mannose-Binding Lectin (genetics), Mannose-Binding Lectin (immunology), Plant Diseases (genetics), Plant Diseases (immunology), Plant Diseases (microbiology), Plant Immunity (genetics), Plant Proteins (genetics), Plant Proteins (immunology), Populus (genetics), Populus (immunology), Populus (microbiology), Protein Kinases (genetics), Protein Kinases (immunology), Receptors, Cell Surface (genetics), Receptors, Cell Surface (immunology), Saccharomycetales (pathogenicity), Saccharomycetales (physiology), Transcriptome (MeSH).
MESH :
- chemical , genetics : Mannose-Binding Lectin, Plant Proteins, Protein Kinases, Receptors, Cell Surface.
- chemistry : Chromosomes, Plant.
- genetics : Disease Resistance, Host-Pathogen Interactions, Plant Diseases, Plant Immunity, Populus.
- immunology : Host-Pathogen Interactions, Mannose-Binding Lectin, Plant Diseases, Plant Proteins, Populus, Protein Kinases, Receptors, Cell Surface.
- microbiology : Plant Diseases, Populus.
- pathogenicity : Saccharomycetales.
- physiology : Saccharomycetales.
- Alleles, Chromosome Mapping, Gene Expression Profiling, Gene Expression Regulation, Plant, Genetic Loci, Transcriptome.

Abstract

Invasive microbes causing diseases such as sudden oak death negatively affect ecosystems and economies around the world. The deployment of resistant genotypes for combating introduced diseases typically relies on breeding programs that can take decades to complete. To demonstrate how this process can be accelerated, we employed a genome-wide association mapping of ca 1,000 resequenced Populus trichocarpa trees individually challenged with Sphaerulina musiva, an invasive fungal pathogen. Among significant associations, three loci associated with resistance were identified and predicted to encode one putative membrane-bound L-type receptor-like kinase and two receptor-like proteins. A susceptibility-associated locus was predicted to encode a putative G-type D-mannose-binding receptor-like kinase. Multiple lines of evidence, including allele analysis, transcriptomics, binding assays, and overexpression, support the hypothesized function of these candidate genes in the P. trichocarpa response to S. musiva.

DOI: 10.1073/pnas.1804428115
PubMed: 30337484
PubMed Central: PMC6233113

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<author><name sortKey="Brueggeman, Robert S" sort="Brueggeman, Robert S" uniqKey="Brueggeman R" first="Robert S" last="Brueggeman">Robert S. Brueggeman</name>
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<author><name sortKey="Franco Coronado, Juan" sort="Franco Coronado, Juan" uniqKey="Franco Coronado J" first="Juan" last="Franco-Coronado">Juan Franco-Coronado</name>
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<author><name sortKey="Chang, Jeff H" sort="Chang, Jeff H" uniqKey="Chang J" first="Jeff H" last="Chang">Jeff H. Chang</name>
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<author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name>
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<author><name sortKey="Barry, Kerrie" sort="Barry, Kerrie" uniqKey="Barry K" first="Kerrie" last="Barry">Kerrie Barry</name>
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<author><name sortKey="Ranjan, Priya" sort="Ranjan, Priya" uniqKey="Ranjan P" first="Priya" last="Ranjan">Priya Ranjan</name>
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<author><name sortKey="Jawdy, Sara" sort="Jawdy, Sara" uniqKey="Jawdy S" first="Sara" last="Jawdy">Sara Jawdy</name>
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<author><name sortKey="Schmutz, Jeremy" sort="Schmutz, Jeremy" uniqKey="Schmutz J" first="Jeremy" last="Schmutz">Jeremy Schmutz</name>
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<country xml:lang="fr">États-Unis</country>
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</placeName>
<wicri:cityArea>Joint Genome Institute, US Department of Energy, Walnut Creek</wicri:cityArea>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
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</placeName>
<wicri:cityArea>HudsonAlpha Institute for Biotechnology, Huntsville</wicri:cityArea>
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<author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name>
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<placeName><region type="state">Californie</region>
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<author><name sortKey="Leboldus, Jared M" sort="Leboldus, Jared M" uniqKey="Leboldus J" first="Jared M" last="Leboldus">Jared M. Leboldus</name>
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<wicri:noRegion>Corvallis</wicri:noRegion>
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<affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, North Dakota State University, Fargo, ND 58102.</nlm:affiliation>
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<placeName><region type="state">Dakota du Nord</region>
</placeName>
<wicri:cityArea>Department of Plant Pathology, North Dakota State University, Fargo</wicri:cityArea>
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<affiliation wicri:level="2"><nlm:affiliation>Forest Engineering, Resources, and Management, Oregon State University, Corvallis, OR 97331.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Oregon</region>
</placeName>
<wicri:cityArea>Forest Engineering, Resources, and Management, Oregon State University, Corvallis</wicri:cityArea>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.</title>
<author><name sortKey="Muchero, Wellington" sort="Muchero, Wellington" uniqKey="Muchero W" first="Wellington" last="Muchero">Wellington Muchero</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Sondreli, Kelsey L" sort="Sondreli, Kelsey L" uniqKey="Sondreli K" first="Kelsey L" last="Sondreli">Kelsey L. Sondreli</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Oregon</region>
</placeName>
<wicri:cityArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Chen, Jin Gui" sort="Chen, Jin Gui" uniqKey="Chen J" first="Jin-Gui" last="Chen">Jin-Gui Chen</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge</wicri:cityArea>
</affiliation>
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<author><name sortKey="Urbanowicz, Breeanna R" sort="Urbanowicz, Breeanna R" uniqKey="Urbanowicz B" first="Breeanna R" last="Urbanowicz">Breeanna R. Urbanowicz</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
<wicri:cityArea>Complex Carbohydrate Research Center, University of Georgia, Athens</wicri:cityArea>
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<author><name sortKey="Zhang, Jin" sort="Zhang, Jin" uniqKey="Zhang J" first="Jin" last="Zhang">Jin Zhang</name>
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<placeName><region type="state">Tennessee</region>
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</affiliation>
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<author><name sortKey="Singan, Vasanth" sort="Singan, Vasanth" uniqKey="Singan V" first="Vasanth" last="Singan">Vasanth Singan</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Californie</region>
</placeName>
<wicri:cityArea>Joint Genome Institute, US Department of Energy, Walnut Creek</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Yang, Yongil" sort="Yang, Yongil" uniqKey="Yang Y" first="Yongil" last="Yang">Yongil Yang</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Brueggeman, Robert S" sort="Brueggeman, Robert S" uniqKey="Brueggeman R" first="Robert S" last="Brueggeman">Robert S. Brueggeman</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Dakota du Nord</region>
</placeName>
<wicri:cityArea>Department of Plant Pathology, North Dakota State University, Fargo</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Franco Coronado, Juan" sort="Franco Coronado, Juan" uniqKey="Franco Coronado J" first="Juan" last="Franco-Coronado">Juan Franco-Coronado</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, North Dakota State University, Fargo, ND 58102.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Dakota du Nord</region>
</placeName>
<wicri:cityArea>Department of Plant Pathology, North Dakota State University, Fargo</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Abraham, Nivi" sort="Abraham, Nivi" uniqKey="Abraham N" first="Nivi" last="Abraham">Nivi Abraham</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Dakota du Nord</region>
</placeName>
<wicri:cityArea>Department of Plant Pathology, North Dakota State University, Fargo</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Yang, Jeong Yeh" sort="Yang, Jeong Yeh" uniqKey="Yang J" first="Jeong-Yeh" last="Yang">Jeong-Yeh Yang</name>
<affiliation wicri:level="2"><nlm:affiliation>Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
<wicri:cityArea>Complex Carbohydrate Research Center, University of Georgia, Athens</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Moremen, Kelley W" sort="Moremen, Kelley W" uniqKey="Moremen K" first="Kelley W" last="Moremen">Kelley W. Moremen</name>
<affiliation wicri:level="2"><nlm:affiliation>Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Géorgie (États-Unis)</region>
</placeName>
<wicri:cityArea>Complex Carbohydrate Research Center, University of Georgia, Athens</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Weisberg, Alexandra J" sort="Weisberg, Alexandra J" uniqKey="Weisberg A" first="Alexandra J" last="Weisberg">Alexandra J. Weisberg</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Oregon</region>
</placeName>
<wicri:cityArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Chang, Jeff H" sort="Chang, Jeff H" uniqKey="Chang J" first="Jeff H" last="Chang">Jeff H. Chang</name>
<affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Oregon</region>
</placeName>
<wicri:cityArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Lindquist, Erika" sort="Lindquist, Erika" uniqKey="Lindquist E" first="Erika" last="Lindquist">Erika Lindquist</name>
<affiliation wicri:level="2"><nlm:affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Californie</region>
</placeName>
<wicri:cityArea>Joint Genome Institute, US Department of Energy, Walnut Creek</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Barry, Kerrie" sort="Barry, Kerrie" uniqKey="Barry K" first="Kerrie" last="Barry">Kerrie Barry</name>
<affiliation wicri:level="2"><nlm:affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Californie</region>
</placeName>
<wicri:cityArea>Joint Genome Institute, US Department of Energy, Walnut Creek</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Ranjan, Priya" sort="Ranjan, Priya" uniqKey="Ranjan P" first="Priya" last="Ranjan">Priya Ranjan</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Jawdy, Sara" sort="Jawdy, Sara" uniqKey="Jawdy S" first="Sara" last="Jawdy">Sara Jawdy</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Schmutz, Jeremy" sort="Schmutz, Jeremy" uniqKey="Schmutz J" first="Jeremy" last="Schmutz">Jeremy Schmutz</name>
<affiliation wicri:level="2"><nlm:affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Californie</region>
</placeName>
<wicri:cityArea>Joint Genome Institute, US Department of Energy, Walnut Creek</wicri:cityArea>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Alabama</region>
</placeName>
<wicri:cityArea>HudsonAlpha Institute for Biotechnology, Huntsville</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name>
<affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Tennessee</region>
</placeName>
<wicri:cityArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge</wicri:cityArea>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Californie</region>
</placeName>
<wicri:cityArea>Joint Genome Institute, US Department of Energy, Walnut Creek</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Leboldus, Jared M" sort="Leboldus, Jared M" uniqKey="Leboldus J" first="Jared M" last="Leboldus">Jared M. Leboldus</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331; jared.leboldus@science.oregonstate.edu.</nlm:affiliation>
<country wicri:rule="url">États-Unis</country>
<wicri:regionArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis</wicri:regionArea>
<wicri:noRegion>Corvallis</wicri:noRegion>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, North Dakota State University, Fargo, ND 58102.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Dakota du Nord</region>
</placeName>
<wicri:cityArea>Department of Plant Pathology, North Dakota State University, Fargo</wicri:cityArea>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>Forest Engineering, Resources, and Management, Oregon State University, Corvallis, OR 97331.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Oregon</region>
</placeName>
<wicri:cityArea>Forest Engineering, Resources, and Management, Oregon State University, Corvallis</wicri:cityArea>
</affiliation>
</author>
</analytic>
<series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title>
<idno type="eISSN">1091-6490</idno>
<imprint><date when="2018" type="published">2018</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alleles (MeSH)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Plant (chemistry)</term>
<term>Disease Resistance (genetics)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genetic Loci (MeSH)</term>
<term>Host-Pathogen Interactions (genetics)</term>
<term>Host-Pathogen Interactions (immunology)</term>
<term>Mannose-Binding Lectin (genetics)</term>
<term>Mannose-Binding Lectin (immunology)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (immunology)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plant Immunity (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (immunology)</term>
<term>Populus (genetics)</term>
<term>Populus (immunology)</term>
<term>Populus (microbiology)</term>
<term>Protein Kinases (genetics)</term>
<term>Protein Kinases (immunology)</term>
<term>Receptors, Cell Surface (genetics)</term>
<term>Receptors, Cell Surface (immunology)</term>
<term>Saccharomycetales (pathogenicity)</term>
<term>Saccharomycetales (physiology)</term>
<term>Transcriptome (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Allèles (MeSH)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Chromosomes de plante (composition chimique)</term>
<term>Immunité des plantes (génétique)</term>
<term>Interactions hôte-pathogène (génétique)</term>
<term>Interactions hôte-pathogène (immunologie)</term>
<term>Lectine liant le mannose (génétique)</term>
<term>Lectine liant le mannose (immunologie)</term>
<term>Locus génétiques (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (immunologie)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Populus (génétique)</term>
<term>Populus (immunologie)</term>
<term>Populus (microbiologie)</term>
<term>Protein kinases (génétique)</term>
<term>Protein kinases (immunologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (immunologie)</term>
<term>Récepteurs de surface cellulaire (génétique)</term>
<term>Récepteurs de surface cellulaire (immunologie)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Saccharomycetales (pathogénicité)</term>
<term>Saccharomycetales (physiologie)</term>
<term>Transcriptome (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Mannose-Binding Lectin</term>
<term>Plant Proteins</term>
<term>Protein Kinases</term>
<term>Receptors, Cell Surface</term>
</keywords>
<keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Chromosomes, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Chromosomes de plante</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term>
<term>Host-Pathogen Interactions</term>
<term>Plant Diseases</term>
<term>Plant Immunity</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Immunité des plantes</term>
<term>Interactions hôte-pathogène</term>
<term>Lectine liant le mannose</term>
<term>Maladies des plantes</term>
<term>Populus</term>
<term>Protein kinases</term>
<term>Protéines végétales</term>
<term>Récepteurs de surface cellulaire</term>
<term>Résistance à la maladie</term>
</keywords>
<keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Interactions hôte-pathogène</term>
<term>Lectine liant le mannose</term>
<term>Maladies des plantes</term>
<term>Populus</term>
<term>Protein kinases</term>
<term>Protéines végétales</term>
<term>Récepteurs de surface cellulaire</term>
</keywords>
<keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Host-Pathogen Interactions</term>
<term>Mannose-Binding Lectin</term>
<term>Plant Diseases</term>
<term>Plant Proteins</term>
<term>Populus</term>
<term>Protein Kinases</term>
<term>Receptors, Cell Surface</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Saccharomycetales</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Saccharomycetales</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Saccharomycetales</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Saccharomycetales</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Alleles</term>
<term>Chromosome Mapping</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genetic Loci</term>
<term>Transcriptome</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Allèles</term>
<term>Analyse de profil d'expression de gènes</term>
<term>Cartographie chromosomique</term>
<term>Locus génétiques</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Transcriptome</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Invasive microbes causing diseases such as sudden oak death negatively affect ecosystems and economies around the world. The deployment of resistant genotypes for combating introduced diseases typically relies on breeding programs that can take decades to complete. To demonstrate how this process can be accelerated, we employed a genome-wide association mapping of <i>ca</i>
 1,000 resequenced <i>Populus trichocarpa</i>
 trees individually challenged with <i>Sphaerulina musiva</i>
, an invasive fungal pathogen. Among significant associations, three loci associated with resistance were identified and predicted to encode one putative membrane-bound L-type receptor-like kinase and two receptor-like proteins. A susceptibility-associated locus was predicted to encode a putative G-type D-mannose-binding receptor-like kinase. Multiple lines of evidence, including allele analysis, transcriptomics, binding assays, and overexpression, support the hypothesized function of these candidate genes in the <i>P. trichocarpa</i>
 response to <i>S. musiva</i>
.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30337484</PMID>
<DateCompleted><Year>2019</Year>
<Month>05</Month>
<Day>01</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>05</Month>
<Day>01</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1091-6490</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>115</Volume>
<Issue>45</Issue>
<PubDate><Year>2018</Year>
<Month>11</Month>
<Day>06</Day>
</PubDate>
</JournalIssue>
<Title>Proceedings of the National Academy of Sciences of the United States of America</Title>
<ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation>
</Journal>
<ArticleTitle>Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.</ArticleTitle>
<Pagination><MedlinePgn>11573-11578</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1073/pnas.1804428115</ELocationID>
<Abstract><AbstractText>Invasive microbes causing diseases such as sudden oak death negatively affect ecosystems and economies around the world. The deployment of resistant genotypes for combating introduced diseases typically relies on breeding programs that can take decades to complete. To demonstrate how this process can be accelerated, we employed a genome-wide association mapping of <i>ca</i>
 1,000 resequenced <i>Populus trichocarpa</i>
 trees individually challenged with <i>Sphaerulina musiva</i>
, an invasive fungal pathogen. Among significant associations, three loci associated with resistance were identified and predicted to encode one putative membrane-bound L-type receptor-like kinase and two receptor-like proteins. A susceptibility-associated locus was predicted to encode a putative G-type D-mannose-binding receptor-like kinase. Multiple lines of evidence, including allele analysis, transcriptomics, binding assays, and overexpression, support the hypothesized function of these candidate genes in the <i>P. trichocarpa</i>
 response to <i>S. musiva</i>
.</AbstractText>
<CopyrightInformation>Copyright © 2018 the Author(s). Published by PNAS.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Muchero</LastName>
<ForeName>Wellington</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sondreli</LastName>
<ForeName>Kelsey L</ForeName>
<Initials>KL</Initials>
<AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Jin-Gui</ForeName>
<Initials>JG</Initials>
<Identifier Source="ORCID">0000-0002-1752-4201</Identifier>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Urbanowicz</LastName>
<ForeName>Breeanna R</ForeName>
<Initials>BR</Initials>
<AffiliationInfo><Affiliation>Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Jin</ForeName>
<Initials>J</Initials>
<Identifier Source="ORCID">0000-0002-8397-5078</Identifier>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Singan</LastName>
<ForeName>Vasanth</ForeName>
<Initials>V</Initials>
<AffiliationInfo><Affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Yongil</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Brueggeman</LastName>
<ForeName>Robert S</ForeName>
<Initials>RS</Initials>
<AffiliationInfo><Affiliation>Department of Plant Pathology, North Dakota State University, Fargo, ND 58102.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Franco-Coronado</LastName>
<ForeName>Juan</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Department of Plant Pathology, North Dakota State University, Fargo, ND 58102.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Abraham</LastName>
<ForeName>Nivi</ForeName>
<Initials>N</Initials>
<AffiliationInfo><Affiliation>Department of Plant Pathology, North Dakota State University, Fargo, ND 58102.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Jeong-Yeh</ForeName>
<Initials>JY</Initials>
<AffiliationInfo><Affiliation>Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Moremen</LastName>
<ForeName>Kelley W</ForeName>
<Initials>KW</Initials>
<Identifier Source="ORCID">0000-0003-1768-582X</Identifier>
<AffiliationInfo><Affiliation>Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Weisberg</LastName>
<ForeName>Alexandra J</ForeName>
<Initials>AJ</Initials>
<AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chang</LastName>
<ForeName>Jeff H</ForeName>
<Initials>JH</Initials>
<Identifier Source="ORCID">0000-0002-1833-0695</Identifier>
<AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lindquist</LastName>
<ForeName>Erika</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Barry</LastName>
<ForeName>Kerrie</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ranjan</LastName>
<ForeName>Priya</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jawdy</LastName>
<ForeName>Sara</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Schmutz</LastName>
<ForeName>Jeremy</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tuskan</LastName>
<ForeName>Gerald A</ForeName>
<Initials>GA</Initials>
<AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Joint Genome Institute, US Department of Energy, Walnut Creek, CA 94598.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>LeBoldus</LastName>
<ForeName>Jared M</ForeName>
<Initials>JM</Initials>
<Identifier Source="ORCID">0000-0003-3303-4269</Identifier>
<AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331; jared.leboldus@science.oregonstate.edu.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Plant Pathology, North Dakota State University, Fargo, ND 58102.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Forest Engineering, Resources, and Management, Oregon State University, Corvallis, OR 97331.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>P01 GM107012</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant><GrantID>P41 GM103390</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType>
<PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>10</Month>
<Day>18</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Proc Natl Acad Sci U S A</MedlineTA>
<NlmUniqueID>7505876</NlmUniqueID>
<ISSNLinking>0027-8424</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D037601">Mannose-Binding Lectin</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D011956">Receptors, Cell Surface</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>EC 2.7.-</RegistryNumber>
<NameOfSubstance UI="D011494">Protein Kinases</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000483" MajorTopicYN="N">Alleles</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D056426" MajorTopicYN="N">Genetic Loci</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D037601" MajorTopicYN="N">Mannose-Binding Lectin</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D057865" MajorTopicYN="N">Plant Immunity</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.

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